From The Labs

This two-step approach can expedite finding answers to complex genetic conditions

To function normally, the human brain requires the right amount of a number of proteins, including MeCP2. Having twice the normal amount of MeCP2, the result of having an extra copy of the gene MECP2, causes severe neurological disorders that include intellectual disability, autism spectrum disorders, motor dysfunction and other medical complications.

National Human Genome Research Institute/Jonathan Bailey.

“Animal models that have an extra copy of this gene mimic the human condition, and deleting or neutralizing the extra gene corrects all the symptoms,” Dr. Huda Zoghbi, professor of molecular and human genetics and of pediatrics and neuroscience at Baylor and director of the Jan and Dan Duncan Neurological Research Institute. “These results raised hopes that one day patients with MECP2 duplication syndrome could be treated by normalizing levels of MeCP2.”

Dr. Huda Zoghbi

Unfortunately, MeCP2 does not lend itself to be affected by small pharmaceuticals, “but we can screen for other molecules that regulate MeCP2 and might be affected by available drugs. In this study we focused on kinases and phosphatases that might regulate MeCP2,” said Zoghbi, who also is an investigator at the Howard Hughes Medical Institute.

A two-step approach leads to encouraging results

The first step consisted of genetically modifying a laboratory cell line in which the researchers could monitor the levels of fluorescent MeCP2 as they inhibited molecules that might be involved in its regulation. First author Dr. Laura Lombardi, a postdoctoral researcher in the Zoghbi lab at the Howard Hughes Medical Institute, developed this cell line and then used it to systematically inhibit one by one the nearly 900 kinase and phosphatase genes whose activity could be potentially inhibited with drugs.

“We wanted to determine which ones of those hundreds of genes would reduce the level of MeCP2 when inhibited,” Lombardi said. “If we found one whose inhibition would result in a reduction of MeCP2 levels, then we would look for a drug that we could use.”

The researchers identified four genes than when inhibited lowered MeCP2 level. Then, Lombardi and her colleagues moved on to the next step, testing how reduction of one or more of these genes would affect MeCP2 levels in mice. They showed that mice lacking the gene for the kinase HIPK2 or having reduced phosphatase PP2A had decreased levels of MeCP2 in the brain.

“These results gave us the proof of principle that it is possible to go from screening in a cell line to find something that would work in the brain,” Lombardi said.

Most interestingly, treating animal models of MECP2 duplication syndrome with drugs that inhibit phosphatase PP2A was sufficient to partially rescue some of the motor abnormalities in the mouse model of the disease.

“This strategy would allow us to find more regulators of MeCP2,” Zoghbi said. “We cannot rely on just one. If we have several to choose from, we can select the best and safest ones to move to the clinic.”

Beyond MeCP2, there are many other genes that cause a medical condition because they are either duplicated or decreased. The strategy Zoghbi and her colleagues used here also can be applied to these other conditions to try to restore the normal levels of the affected proteins and possibly reduce or eliminate the symptoms.

Read all the details of this study in the journal Science Translational Medicine.


Other contributors to this work include Manar Zaghlula, Yehezkel Sztainberg, Steven A. Baker, Tiemo J. Klisch, Amy A. Tang and Eric J. Huang.The researchers are affiliated with one or more of the following institutions, Baylor College of Medicine, the Jan and Dan Duncan Neurological Research Institute at Texas Children’s Hospital, Stanford University School of Medicine and the University of California, San Francisco.

This project was funded by the National Institutes of Health (5R01NS057819), the Rett Syndrome Research Trust and 401K Project from MECP2 duplication syndrome families, and the Howard Hughes Medical Institute. This work also was made possible by the following Baylor College of Medicine core facilities: Cell-Based Assay Screening Service (NIH, P30 CA125123), Cytometry and Cell Sorting Core (National Institute of Allergy and Infectious Diseases, P30AI036211; National Cancer Institute P30CA125123; and National Center for Research Resources, S10RR024574), Pathway Discovery Proteomics Core, the DNA Sequencing and Gene Vector Core (Diabetes and Endocrinology Research Center, DK079638), and the mouse behavioral core of the Intellectual and Developmental Disabilities Research Center (NIH, U54 HD083092 from the National Institute of Child Health and Human Development).


Ana María Rodríguez, Ph.D.

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